The Bayesian Filtering Library (BFL) [ref] provides an application independent framework for inference in Dynamic Bayesian Networks

License type : Open source. • Released : April 21, 2010 • Downloads : 128 • Cost : $0.00

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The PDB through Microsoft Windows, or WPDB for short, is a Microsoft Windows 3.1 Windows95 and Windows NT (client and server) based program to interrogate the 3-dimensional structure of biological macromolecules as found in the Protein Data Bank(PDB)

License type : Freeware. • Released : January 24, 1998 • Downloads : 166 • Cost : $0.00

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Program for molecular graphics visualisation originally developed by Roger Sayle

License type : Freeware. • Released : February 17, 2010 • Downloads : 164 • Cost : $0.00

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Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses.

License type : Open source. • Released : October 11, 2008 • Downloads : 308 • Cost : $0.00

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Detailed analysis of selection on amino acid properties using user-defined phylogenetic trees.

License type : Freeware. • Released : November 3, 2007 • Downloads : 123 • Cost : $0.00

ENIGMA is a software tool to extract gene expression modules from perturbational microarray data, based on the use of combinatorial statistics and graph-based clustering.

License type : Open source. • Released : August 29, 2007 • Downloads : 149 • Cost : $0.00

VisIt is a free interactive parallel visualization and graphical analysis tool for viewing scientific data on Unix and PC platforms.

License type : Open source. • Released : April 21, 0208 • Downloads : 236 • Cost : $0.00

E-Cell Project is an international research project aiming to model and reconstruct biological phenomena in silico, and developing necessary theoretical supports, technologies and software platforms to allow precise whole cell simulation.

License type : Open source. • Released : February 11, 2010 • Downloads : 186 • Cost : $0.00

AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache.

License type : Open source. • Released : March 2, 2010 • Downloads : 106 • Cost : $0.00

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possesses some chemical intelligence for recognizing detailed atom types, hybridization and chemical environments, which is necessary for converting simpler formats

License type : Free to try. • Released : December 18, 2008 • Downloads : 238 • Cost : $55.00

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An application for computing file deltas and later applying those deltas to reconstruct (patch) files. The DELTA Algorithm works well on all types of files, not just text files.

License type : Open source. • Released : February 15, 2010 • Downloads : 259 • Cost : $0.00

MeV is a desktop application for the analysis, visualization and data-mining of large-scale genomic data

License type : Open source. • Released : March 3, 2010 • Downloads : 341 • Cost : $0.00

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G-InforBIO is an e-Workbench for "databasing", comparative genome analysis

License type : Freeware. • Released : July 30, 2009 • Downloads : 175 • Cost : $0.00

a programs that provide a computational and graphical environment for analyzing data from DNA microarray experiments, or other genomic datasets.

License type : Open source. • Released : February 27, 2010 • Downloads : 150 • Cost : $0.00

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UNIO enables you to perform automated NMR data analysis for protein 3D structure determination.

License type : Freeware. • Released : February 27, 2010 • Downloads : 120 • Cost : $0.00

gOpenMol is a tool for the visualization and analysis of molecular structures and their chemical properties. The program uses Tcl/Tk scripting engine and can thus be easily extended without modifying the kernel code.

License type : Freeware. • Released : September 23, 2005 • Downloads : 300 • Cost : $0.00

AnnHyb is a tool for working with and managing nucleotide sequences in multiple formats.

License type : Open source. • Released : February 26, 2010 • Downloads : 334 • Cost : $0.00

DNA-Chip Analyzer is a Windows software package for probe-level (e.g. Affymetrix platform) and high-level analysis of gene expression microarrays and SNP microarrays

License type : Freeware. • Released : March 9, 2010 • Downloads : 222 • Cost : $0.00

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases.

License type : Freeware. • Released : July 23, 2009 • Downloads : 466 • Cost : $0.00

A free, GPL, non-interactive software package for producing plots, charts, and graphics from data. It was developed in a Unix/C environment and runs on various Unix, Linux, and win32 systems.

License type : Open source. • Released : March 11, 2009 • Downloads : 145 • Cost : $0.00

Model and manipulate protein coordinates.

License type : Free to try. • Released : February 17, 2010 • Downloads : 110 • Cost : $0.00

Learn about the night sky.

License type : Freeware. • Released : February 17, 2010 • Downloads : 136 • Cost : $0.00

A projectile motion simulator.

License type : Free to try. • Released : February 17, 2010 • Downloads : 106 • Cost : $0.00

Simulation of a slider crank mechanism.

License type : Free to try. • Released : February 17, 2010 • Downloads : 95 • Cost : $15.00

A planetary gear train simulator.

License type : Free to try. • Released : February 17, 2010 • Downloads : 115 • Cost : $15.00

Constructs ray diagrams explaining image formation by mirrors and thin lenses.

License type : Free to try. • Released : February 17, 2010 • Downloads : 96 • Cost : $0.00

Simulates the reflection of a laser ray on plane mirrors.

License type : Free to try. • Released : February 17, 2010 • Downloads : 81 • Cost : $0.00

Uniform circular motion and simple harmonic motion simulator.

License type : Free to try. • Released : February 17, 2010 • Downloads : 97 • Cost : $0.00

Flow cytometry data analysis.

License type : Demo. • Released : February 17, 2010 • Downloads : 145 • Cost : $1.00

Learn life science, counting, letter recognition and more.

License type : Demo. • Released : February 17, 2010 • Downloads : 142 • Cost : $0.00