Evaluate the statistical significance of differential gene expression based on microarray data
a tool for exploring the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles.
Maxima is a fairly complete computer algebra system written in lisp with an emphasis on symbolic computation.It is based on DOE-MACSYMA and licensed under the GPL.
Bioclipse is based on the Eclipse Rich Client Platform (RCP) which means that Bioclipse inherits a state-of-the-art plugin architecture, functionality, and visual interfaces from Eclipse.
MolPOV is a graphics file converter that reads Brookhaven Protein Data Bank format files
MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, and testing evolutionary hypotheses.
The Integrated Genome Browser (IGB, pronounced Ig-Bee) is an interactive, zoomable, scrollable software program you can use to visualize and explore genome-scale data sets
The Bayesian Filtering Library (BFL) [ref] provides an application independent framework for inference in Dynamic Bayesian Networks
The PDB through Microsoft Windows, or WPDB for short, is a Microsoft Windows 3.1 Windows95 and Windows NT (client and server) based program to interrogate the 3-dimensional structure of biological macromolecules as found in the Protein Data Bank(PDB)
Program for molecular graphics visualisation originally developed by Roger Sayle
Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses.
Detailed analysis of selection on amino acid properties using user-defined phylogenetic trees.
VisIt is a free interactive parallel visualization and graphical analysis tool for viewing scientific data on Unix and PC platforms.
E-Cell Project is an international research project aiming to model and reconstruct biological phenomena in silico, and developing necessary theoretical supports, technologies and software platforms to allow precise whole cell simulation.
AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache.
possesses some chemical intelligence for recognizing detailed atom types, hybridization and chemical environments, which is necessary for converting simpler formats
An application for computing file deltas and later applying those deltas to reconstruct (patch) files. The DELTA Algorithm works well on all types of files, not just text files.
MeV is a desktop application for the analysis, visualization and data-mining of large-scale genomic data
G-InforBIO is an e-Workbench for "databasing", comparative genome analysis
a programs that provide a computational and graphical environment for analyzing data from DNA microarray experiments, or other genomic datasets.
UNIO enables you to perform automated NMR data analysis for protein 3D structure determination.
gOpenMol is a tool for the visualization and analysis of molecular structures and their chemical properties. The program uses Tcl/Tk scripting engine and can thus be easily extended without modifying the kernel code.
AnnHyb is a tool for working with and managing nucleotide sequences in multiple formats.
DNA-Chip Analyzer is a Windows software package for probe-level (e.g. Affymetrix platform) and high-level analysis of gene expression microarrays and SNP microarrays
Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases.
A free, GPL, non-interactive software package for producing plots, charts, and graphics from data. It was developed in a Unix/C environment and runs on various Unix, Linux, and win32 systems.