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AssociationViewer 2.0

AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.

Some Of The Main Features Are (the List May Change In The Future):


  • Display SNPs and their p-values in a genetic context, similar to usual genome browsers

  • Automatically download supplementary information from Ensembl/Biomart

  • Display Hapmap LD plots

  • Print and export the display to various data formats

  • Import external data file such as BED or Wiggle as supplementary tracks

  • Does not require to have a local copy of any data or data source, except for the primary file of SNPs and their respective p-values

  • Users can scroll and browse through their data in real time

  • Small in size (AssociationViewer itself is less than 800 KB, less than 5 MB with the required libraries)

  • Downloaded data is kept in a cache locally for faster access

  • Due to the cache, memory requirement is reasonable


User's rating:

  • Currently 3.00/5
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| Snp | Genetic Content | Associationviewer |

History updates (Complete changelogs since the listing on this site)

2.0 [09-04-10]

  • bugs fixed:
    • 2944537 : BED track stacked mode was incorrectly displayed.
    • 2941083 : BED track display was out of range.
    • 2887226 : zoom when double-clicking was disabled.
  • features implemented:
    • 3028826 : support for Mouse is now built-in.
    • 3029454 : support for command-line arguments (internal use only).
    • 3032044 : local and network files are loaded in the same way (network files are not saved anymore in the cache directory).
    • 3032046 : gzip files are supported (but not zip).
    • 3036990 : plugin framework implemented.
    • 3038684 : most of the SNP related features are hidden when using -d command-line flag.
    • 1994839 : tracks in the track management panel can be moved using drag and drop.
  • 20.01.2010: version 1.7 is online As usual, several new features and bug fixes.
    • bugs fixed:
      • 2896502 : memory selection in the Java Web Start link was not working under MacOS X.
      • 2884539 : incorrect vertical scale for wiggle tracks.
      • 2882320 : some external links were broken.
    • features implemented:
      • 2082477 : connection to the latest version of Ensembl.
      • 2590067 : vertical autoscale for score tracks.
      • 2590076 : bed lines in a track can be stacked.
      • 2887046 : multiple files of the same type can be loaded at the same time.
      • 2891969 : DNA sequence for a specific region can be displayed.
      • 2900421 : external link to KEGG added.

    Other versions : 1.7

    v1.7 [03-30-10]

  • bugs fixed:
    • 2896502 : memory selection in the Java Web Start link was not working under MacOS X.
    • 2884539 : incorrect vertical scale for wiggle tracks.
    • 2882320 : some external links were broken.
  • features implemented:
    • 2082477 : connection to the latest version of Ensembl.
    • 2590067 : vertical autoscale for score tracks.
    • 2590076 : bed lines in a track can be stacked.
    • 2887046 : multiple files of the same type can be loaded at the same time.
    • 2891969 : DNA sequence for a specific region can be displayed.
    • 2900421 : external link to KEGG added.
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    Predicted future versions and notices:

    The doDownload.com constantly monitors the update of all programs, including information from the AssociationViewer 2.0 changelog file, however sometimes it can happen that data are not complete or are outdated.We assume that author continue's to develop 2.1 version with further advanced features, and soon you will be informed. Equally important 3.0 upgrades of the program we will continue to monitor. Full AssociationViewer description has been compared with the overall software database and our algorithm has found the following applications (are showed below).